PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1258s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 212aa    MW: 23575.3 Da    PI: 10.1556
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1258s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.2e-31118174158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rak+e+e ++ ++srkpylheSRh hAlrR+Rg+gGrF
  Kalax.1258s0001.1.p 118 EEPVFVNAKQYHGILRRRQSRAKAESEYRV-ARSRKPYLHESRHLHALRRARGCGGRF 174
                          69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-35116177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.117117177IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27119174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23120142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860122142IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23151174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTSSVHHYSV HTKKVCADHN DQTVGQKKQS DHRIQIAAAG TGISLHDATN NANVQFPAPS  60
HLGVGHAQAA YPYPDPYYRS IFVSQEAQPY SHQSMVHMHL MGIKQAGLPL PSEADAVEEP  120
VFVNAKQYHG ILRRRQSRAK AESEYRVARS RKPYLHESRH LHALRRARGC GGRFLNATKN  180
ENDKQKESTS ASNLQENMNF TNTRKGNALS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-20117182166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282043.12e-74PREDICTED: nuclear transcription factor Y subunit A-7
RefseqXP_010655736.12e-74PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP13e-53NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLD7TKH62e-74D7TKH6_VITVI; Putative uncharacterized protein
STRINGVIT_10s0003g04650.t017e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-46nuclear factor Y, subunit A7